Launch Ensemble Analysis on Compute Cloud

flyvis_cli.analysis.analysis

Script to run ensemble analysis.

run_ensemble_analysis

run_ensemble_analysis(args, kwargs)

Launch ensemble analysis job.

Parameters:

Name	Type	Description	Default
args	Namespace	Command-line arguments.	required
kwargs	List[str]	Additional keyword arguments as a list of strings.	required

Source code in flyvis_cli/analysis/analysis.py

def run_ensemble_analysis(args: argparse.Namespace, kwargs: List[str]) -> None:
    """
    Launch ensemble analysis job.

    Args:
        args: Command-line arguments.
        kwargs: Additional keyword arguments as a list of strings.
    """
    launch_single(
        args.ensemble_id,
        args.task_name,
        args.nP,
        args.gpu,
        args.q,
        args.ensemble_analysis_script,
        args.dry,
        kwargs,
    )

usage:
flyvis analysis [-h] [...] --ensemble_id ENSEMBLE_ID --task_name TASK_NAME [ensemble_analysis_script_options...]
       or
analysis.py [-h] [...] --ensemble_id ENSEMBLE_ID --task_name TASK_NAME [ensemble_analysis_script_options...]

For a full list of options and default arguments, run: flyvis ensemble-analysis --help

Run ensemble analysis on the compute cloud. Launches a single job to analyze all models in the ensemble.

options:
  -h, --help            show this help message and exit
  --nP NP               Number of processors to use (default: 4).
  --gpu GPU             GPU configuration (default: 'num=1').
  --q Q                 Queue to submit the job to.
  --ensemble_id ENSEMBLE_ID
                        ID of the ensemble, e.g., 0045.
  --task_name TASK_NAME
                        Name given to the task, e.g., 'flow', 'depth', 'lum'.
  --ensemble_analysis_script ENSEMBLE_ANALYSIS_SCRIPT
                        Script to run for ensemble analysis. Default: /groups/turaga/home/lappalainenj/FlyVis/private/flyvision/flyvis_cli/analysis/ensemble_analysis.py
  --dry                 Perform a dry run without actually launching jobs.