Launch Notebook Per Model on Compute Cloud

flyvis_cli.analysis.notebook_per_model

Script to run a notebook for each model of an ensemble.

run_notebook_ensemble

run_notebook_ensemble(args, kwargs)

Launch notebook jobs for an ensemble of models.

Parameters:

Name	Type	Description	Default
args	Namespace	Command-line arguments.	required
kwargs	List[str]	Additional keyword arguments as a list of strings.	required

Source code in flyvis_cli/analysis/notebook_per_model.py

def run_notebook_ensemble(args: argparse.Namespace, kwargs: List[str]) -> None:
    """
    Launch notebook jobs for an ensemble of models.

    Args:
        args: Command-line arguments.
        kwargs: Additional keyword arguments as a list of strings.
    """
    # remove conflicting argument
    launch_range(
        args.start,
        args.end,
        args.ensemble_id,
        args.task_name,
        args.nP,
        args.gpu,
        args.q,
        str(NOTEBOOK_SCRIPT_DIR),
        args.dry,
        # add hybrid argument
        ["--notebook_per_model_path", args.notebook_per_model_path]
        + ["notebook_per_model:bool=true"]
        + kwargs,
    )

usage:
flyvis notebook-per-model [-h] [...] --ensemble_id ENSEMBLE_ID --task_name TASK_NAME --notebook_per_model_path PATH
       or
notebook_per_model.py [-h] [...] --ensemble_id ENSEMBLE_ID --task_name TASK_NAME --notebook_per_model_path PATH

Run a notebook for each model of an ensemble on the compute cloud.

options:
  -h, --help            show this help message and exit
  --start START         Start id of ensemble.
  --end END             End id of ensemble.
  --nP NP               Number of processors.
  --gpu GPU             Number of GPUs.
  --q Q                 Queue.
  --ensemble_id ENSEMBLE_ID
                        Id of the ensemble, e.g. 0045.
  --task_name TASK_NAME
                        Name given to the task, e.g., flow.
  --notebook_per_model_path NOTEBOOK_PER_MODEL_PATH
                        Path of the notebook to execute. Default: /groups/tura
                        ga/home/lappalainenj/FlyVis/private/flyvision/flyvis/a
                        nalysis/__main_per_model__.ipynb
  --dry                 Perform a dry run without actually launching jobs.